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d3 ontology

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This commit is contained in:
j 2018-05-31 16:59:17 +02:00
commit 6a8450e773
6 changed files with 341 additions and 0 deletions
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16
static/ontology/index.css Normal file
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.node circle {
fill: #fff;
stroke: steelblue;
stroke-width: 1.5px;
}
.node {
cursor: pointer;
font: 10px sans-serif;
}
.link {
fill: none;
stroke: #ccc;
stroke-width: 1.5px;
}

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static/ontology/index.html Normal file
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<!DOCTYPE html>
<html>
<head>
<meta charset="utf-8">
<script src="https://d3js.org/d3.v3.min.js"></script>
<link rel="stylesheet" href="index.css">
<title>Ontology Tree</title>
</head>
<body>
<script src="index.js"></script>
</body>
</html>

142
static/ontology/index.js Normal file
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var margin = {top: 20, right: 120, bottom: 20, left: 120},
width = 1200 - margin.right - margin.left,
height = 4000 - margin.top - margin.bottom;
var i = 0,
duration = 750,
root;
var tree = d3.layout.tree()
.size([height, width]);
var diagonal = d3.svg.diagonal()
.projection(function(d) { return [d.y, d.x]; });
var svg = d3.select("body").append("svg")
.attr("width", width + margin.right + margin.left)
.attr("height", height + margin.top + margin.bottom)
.append("g")
.attr("transform", "translate(" + margin.left + "," + margin.top + ")");
d3.json("sized_ontology.json", function(error, flare) {
root = flare;
root.x0 = height / 2;
root.y0 = 0;
function collapse(d) {
if (d.children) {
if (!d.children[0].children) {
d._children = d.children;
d._children.forEach(collapse);
d.children = null;
} else {
d.children.forEach(collapse);
}
}
}
root.children.forEach(collapse);
update(root);
});
d3.select(self.frameElement).style("height", "800px");
function update(source) {
// Compute the new tree layout.
var nodes = tree.nodes(root).reverse(),
links = tree.links(nodes);
// Normalize for fixed-depth.
nodes.forEach(function(d) { d.y = d.depth * 180; });
// Update the nodes…
var node = svg.selectAll("g.node")
.data(nodes, function(d) { return d.id || (d.id = ++i); });
// Enter any new nodes at the parent's previous position.
var nodeEnter = node.enter().append("g")
.attr("class", "node")
.attr("transform", function(d) { return "translate(" + source.y0 + "," + source.x0 + ")"; })
.on("click", click);
nodeEnter.append("circle")
.attr("r", 1e-6)
.style("fill", function(d) { return d.children || d._children ? "#fff": "lightsteelblue"; });
nodeEnter.append("text")
.attr("x", function(d) { return d.children || d._children ? -10 : 10; })
.attr("dy", ".35em")
.attr("text-anchor", function(d) { return d.children || d._children ? "end" : "start"; })
.text(function(d) { return d.name; })
.style("fill-opacity", 1e-6);
// Transition nodes to their new position.
var nodeUpdate = node.transition()
.duration(duration)
.attr("transform", function(d) { return "translate(" + d.y + "," + d.x + ")"; });
nodeUpdate.select("circle")
.attr("r", 4.5)
.style("fill", function(d) { return d.children || d._children ? "#fff": "lightsteelblue"; });
nodeUpdate.select("text")
.style("fill-opacity", 1);
// Transition exiting nodes to the parent's new position.
var nodeExit = node.exit().transition()
.duration(duration)
.attr("transform", function(d) { return "translate(" + source.y + "," + source.x + ")"; })
.remove();
nodeExit.select("circle")
.attr("r", 1e-6);
nodeExit.select("text")
.style("fill-opacity", 1e-6);
// Update the links…
var link = svg.selectAll("path.link")
.data(links, function(d) { return d.target.id; });
// Enter any new links at the parent's previous position.
link.enter().insert("path", "g")
.attr("class", "link")
.attr("d", function(d) {
var o = {x: source.x0, y: source.y0};
return diagonal({source: o, target: o});
});
// Transition links to their new position.
link.transition()
.duration(duration)
.attr("d", diagonal);
// Transition exiting nodes to the parent's new position.
link.exit().transition()
.duration(duration)
.attr("d", function(d) {
var o = {x: source.x, y: source.y};
return diagonal({source: o, target: o});
})
.remove();
// Stash the old positions for transition.
nodes.forEach(function(d) {
d.x0 = d.x;
d.y0 = d.y;
});
}
// Toggle children on click.
function click(d) {
if (d.children) {
d._children = d.children;
d.children = null;
} else {
d.children = d._children;
d._children = null;
}
update(d);
}